When a waiver is submitted, the MAJCOM will usually disposition the physical for each category. So, if you are applying for IFC IA, they will consider IFC I/IA/III/RPA and commissioning. FC II only refers to trained pilots, navs and flight docs, so that doesn't apply. I've never dealt with recruiters, but from what I've seen they really don't have a good grasp on how waivers are handled. Let the system play its hand. If you don't like what is offered, then take the next step. But, don't do anything until then.